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Humboldt-Universitaet zu Berlin - Collaborative Research Center for Theoretical Biology


This folder holds the following references to publications, sorted by year and author.

There are 287 references in this bibliography folder.

Blüthgen, N, Legewie, S, Kielbasa, SM, Schramme, A, Tchernitsa, OI, Keil, J, Solf, A, Vingron, M, Schäfer, R, Herzel, H, and Sers, C (2009).
A Systems Biological Approach suggests that Transcriptional Feedback Regulation by DUSP6 Shapes ERK Activity in RAS-Transforming Fibroblasts.
FEBS Journal:accepted 2008.

Bozek, K, Rel\@tabacckludge\'ogio, A, Kielbasa, SM, Heine, M, Dame, C, Kramer, A, and Herzel, H (2009).
Regulation of clock controlled genes in mammals.
n.n.:submitted 28.07.2008.

Busse, D, Rosa, Md, Hobiger, K, Thurley, K, Scheffold, A, and Höfer, T (2009).
Competing feedback loops shape IL-2 signaling between helper and regulatory T lymphocytes in cellular microenvironments.
n.n.:submitted 30.09.2008.

Chaurasia, G, Malhotra, S, Russ, J, Schnoegl, S, Hänig, C, Wanker, EE, and Futschik, ME (2009).
UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome.
Nucleic Acids Res., 37 (Database issue):D657-660.

Creutzig, F, Wohlgemuth, S, Stumpner, A, Benda, J, Ronacher, B, and Herz, AV (2009).
Time-scale invariant representation of acoustic communication signals by a bursting neuron.
J. Neurosci.:in press.

Dannowski, J, Flor, M, Telschow, A, and Hammerstein, P (2009).
The effect of sibmating on the infection dynamics of male-killing bacteria.
n.n.:submitted 29.11.2008.

Ebenhöh, O and Handorf, T (2009).
Functional classification of genome-scale metabolic networks.
EURASIP J. Bioinform. Syst. Biol.:Accepted 26.11.08.

Farkhooi, F, Strube, M, and Nawrot, MP (2009).
Serial correlation in neural spike trains: experimental evidence, stochastic modelling, and single neuron variability.
Physical Review E, 79(1):in press.

Figueiredo, S, Höfer, T, Klotz, C, Sers, C, Hartmann, S, Lucius, R, and Hammerstein, P (2009).
Modelling and Simulating IL-10 Production and Regulation by Macrophages after Stimulation with an Immunomodulator of Parasitic Nematodes.
n.n.:submitted 08.2008, under revision.

Granada, A, Hennig, RM, Ronacher, B, Kramer, A, and Herzel, H (2009).
Phase response curves: elucidating the dynamics of coupled oscillators.
Methods Enzymol.:in press.

Hagen, EH, Sullivan, RJ, Schmidt, R, Morris, G, Kempter, R, and Hammerstein, P (2009).
Ecology and neurobiology of toxin avoidance and the paradox of drug reward.
Neuroscience:submitted 20.10.2008.

Hildebrandt, KJ, Benda, J, and Hennig, RM (2009).
The Origin of Adaptation in the Auditory Pathway of Locusts is Specific to Cell Type and Function.
J. Neurosci.:in press.

Hoffmann, S and Holzhütter, HG (2009).
Uncovering metabolic objectives pursued by changes of enzyme levels.
Ann. N. Y. Acad. Sci.:submitted 07.08.2008.

Koehncke, A, Telschow, A, Werren, JH, and Hammerstein, P (2009).
Life and death of an influential passenger: Wolbachia and the evolution of CI-modifiers in hosts.
PLoS ONE:in press.

Kostarakos, K, Hennig, RM, and Römer, H (2009).
Two matched filters and the evolution of mating signals in four species of cricket.
n.n.:resubmitted 21.10.2008.

Legewie, S, Sers, C, and Herzel, H (2009).
Kinetic mechanisms for overexpression insensitivity and oncogene cooperation.
FEBS Letters, 583(1):93-96.

Malek, A, Stelniec, I, Tchernitsa, OI, Sers, C, Schäfer, R, and Schäfer, R (2009).
The role of the architectural transcription factor HMGA2 in controlling the genetic program mediated by mutant KRAS in ovarian epithelial cells.
n.n.:revised manuscript 08.2008.

Malek, A, Tchernitsa, OI, Sers, C, and Schäfer, R (2009).
The architectural transcription factor HMGA2 controls the transcriptional program determing oncogene addiction in epithelial cells.
n.n.:submitted 06.2008.

Nawrot, MP (2009).

In: Analysis of Parallel Spike Trains, ed. by S. Grün, S. Rotter. Springer Press, New York, chap. −, pp. 0.

Nawrot, MP, Schnepel, P, Aertsen, A, and Boucsein, C (2009).
Precisely timed signal transmission in neocortical networks with reliable intermediate-range projections.
Front. Neural Circuits:in press.

Neuhofer, D, Stemmler, M, and Ronacher, B (2009).
Neuronal precision and the limits for acoustic signal recognition in a small neuronal network.
n.n.:submitted 14.11.2008.

Palidwor, G, Shcherbinin, AS, Huska, MR, Rasko, T, Stelzl, U, Arumughan, A, Foulle, R, Porras, P, Sanchez-Pulido, L, Wanker, EE, and Andrade-Navarro, MA (2009).
Detection of alpha-rod repeats using a neural network and application to huntingtin.
PLoS Comp. Biol.:submitted 30.09.2008, under revision.

Rickert, J, Riehle, A, Aertsen, A, Rotter, S, and Nawrot, MP (2009).
Dynamic encoding of movement direction in motor cortical neurons.
n.n.:conditionally accepted 29.12.2008.

Schreiber, S, Samengo, I, and Herz, AV (2009).
Two distinct mechanisms shape spike-timing reliability in response to oscillatory signals.
J. Neurophysiol.:submitted 24.06.2008, currently under revision.

Schulz, E, Mariani, L, Radbruch, A, and Höfer, T (2009).
Biphasic T-bet expression: IL-12, but not IFN-γ, programs late Tbet expression and TH1 polarization.
n.n.:submitted 15.09.2008.